eugene.plot.countplot

eugene.plot.countplot(sdata, vars, groupby=None, orient='h', rc_context={'axes.labelsize': 14, 'axes.titlesize': 16, 'legend.fontsize': 12, 'pdf.fonttype': 42, 'ps.fonttype': 42, 'xtick.labelsize': 12, 'ytick.labelsize': 12}, return_axes=False, **kwargs)

Plots a countplot of a vars in a SeqData using Seaborn.

This function can be used to show the counts of observations in a single or multiple columns of seqs_annot within a SeqData. If a groupby is provided then the counts are grouped by the groupby column.

Parameters:

  • sdata (SeqData) – SeqData object that contains vars in seqs_annot.

  • vars (str or list of str) – vars to plot. Will be plotted in separate adjacent subplots.

  • groupby (str) – Key to group by. If None, will plot counts of each key.

  • orient (str) – Orientation of plot. Either “h” (horizontal) or “v” (vertical).

  • rc_context (Mapping[str, str]) – Matplotlib rc context. Default is eugene.settings.rc_context.

  • return_axes (bool) – Return axes.

  • **kwargs – Additional keyword arguments to pass to seaborn.

Return type:

Optional[Axes]