eugene.plot.scatterplot

eugene.plot.scatterplot(sdata, x, y, seq_idx=None, return_axes=False, **kwargs)

Plots a scatterplot of two columns in seqs_annot using Seaborn.

This function can be used to show the relationship between two columns of seqs_annot within a SeqData. If seq_idx is provided then only the sequences with the given indices are plotted.

Parameters:

  • sdata (SeqData) – SeqData object.

  • x (str) – Key for x-axis.

  • y (str) – Key for y-axis.

  • seq_idx (int or list of int) – Index of sequences to plot.

  • **kwargs (dict) – Additional keyword arguments to pass to _plot_seaborn.

Return type:

None