eugene.plot.multifilter_viz

eugene.plot.multifilter_viz(sdata, filter_nums, pfms_var, num_rows=None, num_cols=None, titles=None, figsize=(12, 10), save=None, **kwargs)

Plot multiple filters in a SeqData object’s uns dictionary as PWM logos.

This function wraps filter_viz. Getting the figure to look nice it more of an art than a science. In experimenting so far, I’ve found that a 8x4 grid with a (12, 10) figure size works well.

Parameters:

• sdata (SeqData) – The SeqData object with sequences and pfms to plot a logo for

• filter_nums (list) – The filter ids to plot

• pfms_var (str) – The var in the xarray dataset to use to get the pfms

• num_rows (int) – The number of rows to use for the figure

• num_cols (int) – The number of columns to use for the figure

• uns_var (str) – The key in the sdata.uns dictionary that contains the pfms to plot

• figsize (tuple) – The figure size to use for the plot

• save (PathLike) – The path to save the figure to

Returns:

axes – The axes objects if return_axes is True

Return type:

list