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EUGENe
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B
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C
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D
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E
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G
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H
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__init__() (eugene.dataload.RandomRC method)
(eugene.models.Conv1DBlock method)
(eugene.models.Conv1DTower method)
(eugene.models.DenseBlock method)
(eugene.models.ProfileModule method)
(eugene.models.RecurrentBlock method)
(eugene.models.SequenceModule method)
(eugene.models.Tower method)
(eugene.models.zoo.Basset method)
(eugene.models.zoo.BPNet method)
(eugene.models.zoo.CNN method)
(eugene.models.zoo.DanQ method)
(eugene.models.zoo.DeepBind method)
(eugene.models.zoo.DeepMEL method)
(eugene.models.zoo.DeepSEA method)
(eugene.models.zoo.DeepSTARR method)
(eugene.models.zoo.dsCNN method)
(eugene.models.zoo.dsFCN method)
(eugene.models.zoo.dsHybrid method)
(eugene.models.zoo.dsRNN method)
(eugene.models.zoo.FactorizedBasset method)
(eugene.models.zoo.FCN method)
(eugene.models.zoo.Hybrid method)
(eugene.models.zoo.Jores21CNN method)
(eugene.models.zoo.Kopp21CNN method)
(eugene.models.zoo.ResidualBind method)
(eugene.models.zoo.RNN method)
(eugene.models.zoo.Satori method)
(eugene.models.zoo.scBasset method)
(eugene.models.zoo.TutorialCNN method)
A
add_obs() (in module eugene.dataload)
attribute_sdata() (in module eugene.interpret)
auprc() (in module eugene.plot)
auroc() (in module eugene.plot)
B
Basset (class in eugene.models.zoo)
boxplot() (in module eugene.plot)
BPNet (class in eugene.models.zoo)
C
clamp_targets_sdata() (in module eugene.preprocess)
CNN (class in eugene.models.zoo)
concat_sdatas() (in module eugene.dataload)
confusion_mtx() (in module eugene.plot)
Conv1DBlock (class in eugene.models)
Conv1DTower (class in eugene.models)
countplot() (in module eugene.plot)
D
DanQ (class in eugene.models.zoo)
DeepBind (class in eugene.models.zoo)
DeepMEL (class in eugene.models.zoo)
DeepSEA (class in eugene.models.zoo)
DeepSTARR (class in eugene.models.zoo)
DenseBlock (class in eugene.models)
distance_cooperativity_gia_plot() (in module eugene.plot)
dsCNN (class in eugene.models.zoo)
dsFCN (class in eugene.models.zoo)
dsHybrid (class in eugene.models.zoo)
dsRNN (class in eugene.models.zoo)
E
eugene
module
eugene.dataload
module
eugene.evaluate
module
eugene.intepret
module
eugene.models
module
eugene.models.zoo
module
eugene.plot
module
eugene.preprocess
module
eugene.train
module
eugene.utils
module
evolve_seqs_sdata() (in module eugene.interpret)
F
FactorizedBasset (class in eugene.models.zoo)
FCN (class in eugene.models.zoo)
filter_viz() (in module eugene.plot)
filters_to_meme_sdata() (in module eugene.interpret)
fit() (in module eugene.train)
fit_sequence_module() (in module eugene.train)
G
generate_pfms_sdata() (in module eugene.interpret)
get_layer() (in module eugene.models)
H
histplot() (in module eugene.plot)
Hybrid (class in eugene.models.zoo)
hyperopt() (in module eugene.train)
I
init_motif_weights() (in module eugene.models)
init_weights() (in module eugene.models)
J
Jores21CNN (class in eugene.models.zoo)
K
Kopp21CNN (class in eugene.models.zoo)
L
list_available_layers() (in module eugene.models)
load_config() (in module eugene.models)
loss_curve() (in module eugene.plot)
M
make_dirs() (in module eugene.utils)
make_unique_ids_sdata() (in module eugene.preprocess)
metric_curve() (in module eugene.plot)
module
eugene
eugene.dataload
eugene.evaluate
eugene.intepret
eugene.models
eugene.models.zoo
eugene.plot
eugene.preprocess
eugene.train
eugene.utils
motif_distance_dependence_gia() (in module eugene.interpret)
multifilter_viz() (in module eugene.plot)
multiseq_track() (in module eugene.plot)
O
ohe_seqs_sdata() (in module eugene.preprocess)
P
pad_seqs_sdata() (in module eugene.preprocess)
performance_scatter() (in module eugene.plot)
performance_summary() (in module eugene.plot)
positional_gia_plot() (in module eugene.plot)
positional_gia_sdata() (in module eugene.interpret)
predictions() (in module eugene.evaluate)
predictions_sequence_module() (in module eugene.evaluate)
ProfileModule (class in eugene.models)
R
RandomRC (class in eugene.dataload)
RecurrentBlock (class in eugene.models)
ResidualBind (class in eugene.models.zoo)
RNN (class in eugene.models.zoo)
S
Satori (class in eugene.models.zoo)
scale_targets_sdata() (in module eugene.preprocess)
scatterplot() (in module eugene.plot)
scBasset (class in eugene.models.zoo)
seq_track() (in module eugene.plot)
SequenceModule (class in eugene.models)
T
Tower (class in eugene.models)
train_test_chrom_split() (in module eugene.preprocess)
train_test_homology_split() (in module eugene.preprocess)
train_test_random_split() (in module eugene.preprocess)
train_val_predictions() (in module eugene.evaluate)
train_val_predictions_sequence_module() (in module eugene.evaluate)
training_summary() (in module eugene.plot)
TutorialCNN (class in eugene.models.zoo)
V
violinplot() (in module eugene.plot)
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